Review



software for performing a blast comparison of two sequences  (Biotechnology Information)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Biotechnology Information software for performing a blast comparison of two sequences
    Software For Performing A Blast Comparison Of Two Sequences, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/software+for+performing+a+blast+comparison+of+two+sequences/us10829818-114-4-17
    Average 90 stars, based on 1 article reviews
    software for performing a blast comparison of two sequences - by Bioz Stars, 2026-10
    90/100 stars

    Images

    Related Articles

    other:

    Article Title: High Prevalence of Fastidious Bacteria in 1520 Cases of Uveitis of Unknown Etiology
    Article Snippet: Any amplicons were sequenced and compared with the GenBank database using the multi-sequence advanced BLAST comparison software from the National Center for Biotechnology Information (Bethesda, MD)4.

    Article Title: Ribosomal protein S3 associates with the TFIIH complex and positively regulates nucleotide excision repair
    Article Snippet: DNA sequence data Protein sequences of rpS3 (NCBI reference sequence NP_000996.2 ) and p44 ( NP_001351496.1 ) were obtained from National Center for Biotechnology Information (NCBI)’s Reference Sequence Database (RefSeq; http://ncbi.nlm.nih.gov/refseq ).

    Article Title: Implication of FOXD2 dysfunction in syndromic congenital anomalies of the kidney and urinary tract (CAKUT)
    Article Snippet: The GeneBank (National Center for Biotechnology Information, NCBI, Bethesda, MD, USA) sequence FOXD2 NM_004474.4 (corresponding to the canonical Ensembl transcript ENST00000334793.6) was used as reference.

    Article Title: Ribosomal protein S3 associates with the TFIIH complex and positively regulates nucleotide excision repair
    Article Snippet: Protein sequences of rpS3 (NCBI reference sequence NP_000996.2 ) and p44 ( NP_001351496.1 ) were obtained from National Center for Biotechnology Information (NCBI)’s Reference Sequence Database (RefSeq; http://ncbi.nlm.nih.gov/refseq ).

    Sequencing:

    Article Title: Preparation, Characterization and Diagnostic Valuation of Two Novel Anti-HPV16 E7 Oncoprotein Monoclonal Antibodies
    Article Snippet: .. The HPV16 E7 protein sequence in the CaSki cell line on The National Center for Biotechnology Information (NCBI) website (ID: NC-001526.2) was used to design the overlapping peptides, which was subsequently synthesized by ChinaPeptides (Shanghai, China) with a purity greater than 95%. ..

    Article Title: The Soybean bZIP Transcription Factor Gene GmbZIP2 Confers Drought and Salt Resistances in Transgenic Plants
    Article Snippet: .. All of the candidate bZIP genes were identified according to the data from the de novo transcriptome sequencing and the National Center for Biotechnology Information (NCBI) database. ..

    Article Title: The solute transport and binding profile of a novel nucleobase cation symporter 2 from the honeybee pathogen Paenibacillus larvae
    Article Snippet: .. A search of the P. larvae B‐3560 genome through the National Center for Biotechnology Information database with the amino acid sequence of the E. coli uric acid transporter UacT (also known as YgfU) using sequence comparison software (tblastn) matched with a presumptive protein (Gb# EFX44190.1) . ..

    Article Title: Enhancing lignan biosynthesis by over-expressing pinoresinol lariciresinol reductase in transgenic wheat.
    Article Snippet: .. The sequence of partial wheat PLR gene was then compared to Forsythia PLR sequence in the GenBank at NCBI (National Centre for Biotechnology Information) by using NCBI Sequence Comparison Software at http://www.ncbi.nlm. nih.gov/ .. To quantify the levels of PLR gene expression in the positive transgenic plants at T0, total RNA was isolated from the leaf tissues by use of an isolation kit (Promega, Madison WI).

    Synthesized:

    Article Title: Preparation, Characterization and Diagnostic Valuation of Two Novel Anti-HPV16 E7 Oncoprotein Monoclonal Antibodies
    Article Snippet: .. The HPV16 E7 protein sequence in the CaSki cell line on The National Center for Biotechnology Information (NCBI) website (ID: NC-001526.2) was used to design the overlapping peptides, which was subsequently synthesized by ChinaPeptides (Shanghai, China) with a purity greater than 95%. ..

    Comparison:

    Article Title: The solute transport and binding profile of a novel nucleobase cation symporter 2 from the honeybee pathogen Paenibacillus larvae
    Article Snippet: .. A search of the P. larvae B‐3560 genome through the National Center for Biotechnology Information database with the amino acid sequence of the E. coli uric acid transporter UacT (also known as YgfU) using sequence comparison software (tblastn) matched with a presumptive protein (Gb# EFX44190.1) . ..

    Article Title: Enhancing lignan biosynthesis by over-expressing pinoresinol lariciresinol reductase in transgenic wheat.
    Article Snippet: .. The sequence of partial wheat PLR gene was then compared to Forsythia PLR sequence in the GenBank at NCBI (National Centre for Biotechnology Information) by using NCBI Sequence Comparison Software at http://www.ncbi.nlm. nih.gov/ .. To quantify the levels of PLR gene expression in the positive transgenic plants at T0, total RNA was isolated from the leaf tissues by use of an isolation kit (Promega, Madison WI).

    Software:

    Article Title: The solute transport and binding profile of a novel nucleobase cation symporter 2 from the honeybee pathogen Paenibacillus larvae
    Article Snippet: .. A search of the P. larvae B‐3560 genome through the National Center for Biotechnology Information database with the amino acid sequence of the E. coli uric acid transporter UacT (also known as YgfU) using sequence comparison software (tblastn) matched with a presumptive protein (Gb# EFX44190.1) . ..

    Article Title: Enhancing lignan biosynthesis by over-expressing pinoresinol lariciresinol reductase in transgenic wheat.
    Article Snippet: .. The sequence of partial wheat PLR gene was then compared to Forsythia PLR sequence in the GenBank at NCBI (National Centre for Biotechnology Information) by using NCBI Sequence Comparison Software at http://www.ncbi.nlm. nih.gov/ .. To quantify the levels of PLR gene expression in the positive transgenic plants at T0, total RNA was isolated from the leaf tissues by use of an isolation kit (Promega, Madison WI).



    Similar Products

    sequence comparison software dnaman  (Lynnon corporation)
    90
    Lynnon corporation sequence comparison software dnaman
    Sequence Comparison Software Dnaman, supplied by Lynnon corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/dnaman+software/10__1016_slash_j__postharvbio__2024__113166-90-0-9
    Average 90 stars, based on 1 article reviews
    sequence comparison software dnaman - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    sequence comparison software megalign  (DNASTAR)
    99
    DNASTAR sequence comparison software megalign
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Sequence Comparison Software Megalign, supplied by DNASTAR, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/MegAlign/pmc10975075-93-29-35
    Average 99 stars, based on 1 article reviews
    sequence comparison software megalign - by Bioz Stars, 2026-10
    99/100 stars
    		  Buy from Supplier
    software for performing a blast comparison of two sequences  (Biotechnology Information)
    90
    Biotechnology Information software for performing a blast comparison of two sequences
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Software For Performing A Blast Comparison Of Two Sequences, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/software+for+performing+a+blast+comparison+of+two+sequences/us10829818-114-4-17
    Average 90 stars, based on 1 article reviews
    software for performing a blast comparison of two sequences - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    multiple sequence comparison by log-expectation (muscle) software  (Novogene)
    90
    Novogene multiple sequence comparison by log-expectation (muscle) software
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Multiple Sequence Comparison By Log Expectation (Muscle) Software, supplied by Novogene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/multiple+sequence+comparison+by+log+expectation++muscle++software/10__1096_slash_fj__201900238rr-79-29-33
    Average 90 stars, based on 1 article reviews
    multiple sequence comparison by log-expectation (muscle) software - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    sequence comparison software tblastn  (Biotechnology Information)
    90
    Biotechnology Information sequence comparison software tblastn
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Sequence Comparison Software Tblastn, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/tblastn+software/pmc06070649-48-34-13
    Average 90 stars, based on 1 article reviews
    sequence comparison software tblastn - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    software for the comparison of dna sequences  (Thermo Fisher)
    90
    Thermo Fisher software for the comparison of dna sequences
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Software For The Comparison Of Dna Sequences, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/pm28276207-47-27-22
    Average 90 stars, based on 1 article reviews
    software for the comparison of dna sequences - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    sequence comparison software  (DNASTAR)
    90
    DNASTAR sequence comparison software
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Sequence Comparison Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/sequence+comparison+software/pm20146053-41-18-22
    Average 90 stars, based on 1 article reviews
    sequence comparison software - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    sequence alignment and comparison software  (DNASTAR)
    90
    DNASTAR sequence alignment and comparison software
    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using <t>MegAlign</t> version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).
    Sequence Alignment And Comparison Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+comparison+software/sequence+alignment+software/10__1111_slash_j__1439___0434__2010__01745__x-38-0-9
    Average 90 stars, based on 1 article reviews
    sequence alignment and comparison software - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using MegAlign version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).

    Journal: Veterinary Sciences

    Article Title: Detection and Phylogenetic Analysis of Caprine Arthritis Encephalitis Virus Using TaqMan-based qPCR in Eastern China

    doi: 10.3390/vetsci11030138

    Figure Lengend Snippet: Phylogenetic tree of caprine arthritis encephalitis virus (CAEV) based on the partial gag gene (about 571 bp). The three strains isolated in this study—JS-2023-1 (no. PP382771), JS-2023-2 (no. PP382772), and SH-2023 (no. PP382773)—are marked by red circles. The other 28 representative sequences were downloaded from GenBank and edited to obtain the corresponding segments using Editseq version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999) based on the sequencing primers used. Multiple sequence alignments were performed using the Clustal V method, and a phylogenetic analysis of the recombinants was performed using MegAlign version 7.1.0 software (DNASTAR Inc., Madison, WI, USA; Lole et al., 1999).

    Article Snippet: To construct primers and probes, the nucleotide sequences of the whole genomes of CAEV were retrieved from the GenBank database and compared, using the CLUSTAL V algorithm in the sequence comparison software MegAlign (MegAlign 5.00, DNASTAR Inc., Madison, WI, USA).

    Techniques: Virus, Isolation, Software, Sequencing